/AbstractAlignment.java/1.1/Tue Jan  9 07:18:44 2001//
/Alignment.java/1.10/Wed Jan 10 16:37:18 2001//
/AlignmentParseException.java/1.1/Sat May 13 18:04:19 2000//
/AlignmentUtils.java/1.6/Sat Mar 24 12:49:11 2001//
/AminoAcidAlignment.java/1.4/Sat Mar 24 12:49:11 2001//
/BootstrappedAlignment.java/1.3/Tue Jan  9 07:18:13 2001//
/CodonAlignment.java/1.3/Tue Mar 27 06:17:28 2001//
/ConcatenatedAlignment.java/1.2/Tue Jan  9 07:18:17 2001//
/GapBalancedAlignment.java/1.4/Thu Jan 11 02:20:58 2001//
/JumbledAlignment.java/1.3/Tue Jan  9 07:18:20 2001//
/ReadAlignment.java/1.3/Tue Jan  9 07:18:24 2001//
/SimpleAlignment.java/1.10/Sun Mar 25 06:04:41 2001//
/SitePattern.java/1.5/Thu Mar  8 05:08:12 2001//
/StrippedAlignment.java/1.3/Tue Jan  9 07:18:37 2001//
/makefile/1.2/Sun Mar  4 14:43:20 2001//
/package.html/1.1/Sat May 13 18:04:19 2000//
D
